Package: taxify
Title: Offline Taxonomic Name Matching Against Darwin Core Backbones
Version: 0.7.0
Authors@R: 
    person("Gilles", "Colling", , "gilles.colling051@gmail.com",
           role = c("aut", "cre", "cph"),
           comment = c(ORCID = "0000-0003-3070-6066"))
Description: Matches taxonomic names against local copies of published
        backbones ('Catalogue of Life', 'GBIF Backbone Taxonomy',
        'ITIS', 'World Flora Online', 'WoRMS', 'NCBI Taxonomy', 'Open
        Tree of Life', 'Euro+Med', 'Species Fungorum', 'AlgaeBase',
        'FishBase', 'SeaLifeBase', 'Reptile Database', 'LCVP', 'WCVP',
        'Mammal Diversity Database', 'AviList', 'LPSN') and two
        vegetation classifications, and resolves each name to its
        accepted name. It performs the name-resolution step of 'taxize'
        and 'WorldFlora', run offline against these files. Names are
        cleaned of authors and qualifiers, matched exactly and then by
        edit distance within their genus, and followed from synonym to
        accepted name, with the backbone version recorded on every row.
        Published trait, status and distribution datasets are joined on
        the accepted name, and so is a table the user supplies.
        Matching runs in the 'vectra' column-store engine.
License: MIT + file LICENSE
URL: https://gillescolling.com/taxify/,
        https://github.com/gcol33/taxify
BugReports: https://github.com/gcol33/taxify/issues
Additional_repositories: https://gcol33.r-universe.dev
Depends: R (>= 4.1.0)
Imports: curl, jsonlite, rlang, vectra (>= 0.12.4)
Suggests: ape, DBI, knitr, openxlsx2, rgbif, rmarkdown, RSQLite, sf,
        taxifydb (>= 0.1.19), terra, testthat (>= 3.0.0), TR8, withr
VignetteBuilder: knitr
Config/testthat/edition: 3
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
Config/roxygen2/version: 8.1.0
Config/pak/sysreqs: libssl-dev
Repository: https://gcol33.r-universe.dev
Date/Publication: 2026-10-13 04:45:01 UTC
RemoteUrl: https://github.com/gcol33/taxify
RemoteRef: HEAD
RemoteSha: 23db251444bbba33af43aab55d704c8330b73870
NeedsCompilation: no
Packaged: 2026-10-13 12:03:55 UTC; root
Author: Gilles Colling [aut, cre, cph] (ORCID:
    <https://orcid.org/0000-0003-3070-6066>)
Maintainer: Gilles Colling <gilles.colling051@gmail.com>